Index

A

all_image_pixel_coordinates() (in module metaspace_converter.to_anndata)

anndata_to_image_array() (in module metaspace_converter), [1] (in module metaspace_converter.anndata_to_array)

C

COL (class in metaspace_converter.constants) coloc_ml_preprocessing() (in module metaspace_converter.colocalization), [1]

colocalization() (in module metaspace_converter.colocalization), [1] create_annotation_id() (in module metaspace_converter.to_anndata)

E

empty_columns_to_nan() (in module metaspace_converter.utils)

G

get_dataset() (in module metaspace_converter.to_anndata)

get_ion_image_shape() (in module metaspace_converter.to_anndata) get_ion_image_to_physical_transformation() (in module metaspace_converter.to_spatialdata)

H

has_optical_image() (in module metaspace_converter.utils)

I

ion_image_pixel_x (metaspace_converter.constants.COL attribute) ion_image_pixel_y (metaspace_converter.constants.COL attribute) ion_image_shape_x (metaspace_converter.constants.COL attribute)

ion_image_shape_y (metaspace_converter.constants.COL attribute) is_non_str_sequence() (in module metaspace_converter.utils) iter_property_paths() (in module metaspace_converter.utils)

M

metaspace_converter module, [1] metaspace_converter.anndata_to_array module metaspace_converter.colocalization module, [1] metaspace_converter.constants module metaspace_converter.to_anndata module metaspace_converter.to_spatialdata module metaspace_converter.utils module

metaspace_to_anndata() (in module metaspace_converter), [1] (in module metaspace_converter.to_anndata) metaspace_to_spatialdata() (in module metaspace_converter), [1] (in module metaspace_converter.to_spatialdata) module metaspace_converter, [1] metaspace_converter.anndata_to_array metaspace_converter.colocalization, [1] metaspace_converter.constants metaspace_converter.to_anndata metaspace_converter.to_spatialdata metaspace_converter.utils

O

optical_image_to_spatial_image() (in module metaspace_converter.to_spatialdata)

S

stringify_list_columns() (in module metaspace_converter.utils)

T

transform_coords() (in module metaspace_converter.utils)